{"domain":"virtualflybrain.org","name":"Virtual Fly Brain","url":"https://inite.ai/en/atlas/virtualflybrain.org","site":"https://virtualflybrain.org","summary":"Serves registered Drosophila brain images, neuron connectomes and gene expression data through a 3D viewer, search, NBLAST similarity queries and Python access.","forWhom":"Neurobiologists and researchers studying Drosophila neuroanatomy, connectomics and gene expression","useCases":["find neurons that innervate a specified brain region","find neurons similar in shape to a given neuron","explore synaptic connections across published connectomes"],"categories":["creative"],"pricing":null,"priceMoves":[],"interfaces":{"readOn":"2026-10-16","apiDocs":null,"openapi":null,"mcp":[{"name":"org.virtualflybrain/vfb3-mcp","tie":"namespace","registered":true,"remotes":["https://vfb3-mcp.virtualflybrain.org"],"packages":[],"probe":{"state":"open","checkedOn":"2026-10-16","toolCount":11,"tools":["get_term_info","run_query","search_terms","list_search_facets","resolve_entity","resolve_combination","list_connectome_datasets","query_connectivity","get_predicted_neurotransmitters","get_known_neurotransmitters","get_hierarchy"],"serverName":"vfb3-mcp-server"}}],"mcpServerCard":null,"status":null},"mcpMeasured":{"server":"https://vfb3-mcp.virtualflybrain.org","checkedSince":"2026-10-19","dailyChecks":9,"uptimePercent":100,"medianMs":490,"signIn":"none","clientRegistration":null,"tools":11,"contextTokens":5987,"definitionsGrade":"B","definitionsScore":83,"typedResults":0,"failingChecks":{"annotations":11},"warnings":{},"coverage":{"share":null,"cases":[{"useCase":"find neurons that innervate a specified brain region","verdict":"unsure","firstTool":null,"checks":["The neurons listed innervate the brain region that was specified.","Each result is a neuron that reaches into the named region."]},{"useCase":"find neurons similar in shape to a given neuron","verdict":"unsure","firstTool":null,"checks":["The results are neurons matched by shape to the given neuron.","Each listed neuron is ranked by shape similarity to the query neuron."]},{"useCase":"explore synaptic connections across published connectomes","verdict":"unsure","firstTool":null,"checks":["The connections shown come from the published connectomes.","Each displayed link shows a synaptic connection between neurons."]}]},"adoption":{"npmWeekly":null,"pypiWeekly":null,"githubStars":9},"score":{"value":83,"parts":{"reliability":100,"definitions":83,"context":81,"adoption":25,"connect":100},"penalties":[]},"advice":{"verdict":"unproven","why":["whether its tools do the product's job has not been judged yet"],"how":[]},"method":"https://inite.ai/en/atlas/mcp/report"},"connect":{"order":["mcp"],"mcp":[{"name":"org.virtualflybrain/vfb3-mcp","url":"https://vfb3-mcp.virtualflybrain.org","answers":"open","checkedOn":"2026-10-16","weakTie":false,"registry":"https://registry.modelcontextprotocol.io/v0/servers?search=org.virtualflybrain%2Fvfb3-mcp","config":{"mcpServers":{"virtualflybrain":{"url":"https://vfb3-mcp.virtualflybrain.org"}}},"install":{"transport":"http","claudeCode":"claude mcp add --transport http virtualflybrain https://vfb3-mcp.virtualflybrain.org","cursor":"cursor://anysphere.cursor-deeplink/mcp/install?name=virtualflybrain&config=eyJ1cmwiOiJodHRwczovL3ZmYjMtbWNwLnZpcnR1YWxmbHlicmFpbi5vcmcifQ%3D%3D","vscode":"vscode:mcp/install?%7B%22name%22%3A%22virtualflybrain%22%2C%22type%22%3A%22http%22%2C%22url%22%3A%22https%3A%2F%2Fvfb3-mcp.virtualflybrain.org%22%7D","connector":{"url":"https://vfb3-mcp.virtualflybrain.org","note":"Add it as a custom connector in the client’s settings; the client opens the sign-in itself when the server asks for one."}}}],"openapi":null,"apiDocs":null,"llmsTxt":null,"status":null,"readOn":"2026-10-16"},"trust":{"readOn":"2026-10-16","certifications":[],"training":null},"used":17,"alive":90,"traits":null,"verifiedPlans":null,"fromVendor":null}