DeepDNA MCP server

• Registry nameai.deepdna/knowledgeverified in the MCP registry

The registry name sits under deepdna.ai. The registry only lets a publisher use that namespace after proving control of the domain through DNS or HTTP.

• Stateanswerschecked 2026-10-19
• Tools6
• Server calls itselfdeepdna
• Server version1.2.0
• Protocol version2025-06-18

On 2026-10-19 the server answered initialize and tools/list without a sign-in. First answer in 66 ms.

• Whether its tools do the product's job has not been judged yet.
• Checked on 3 of the 7 days it takes to judge reliability.

Said by rules from the measurements above. The likely first call is a model's pick from the tool list; read its description before relying on it.

• INITE MCP scoreafter a weeka score needs 7 daily checks: 3 so far
• Use130 PyPI downloads a week
• Answeredmeasuring3 of the 7 daily checks it takes to print a share
• Median first answer153 ms
• Space in an agent's context≈ 856 tokensthe definitions of all its tools (6), which an agent carries on every turn
• Tool definitionsA · 100 of 100
• Typed results0 of 6 toolsdeclared outputSchema: results come typed, read once

• Every tool passes all six checks.

A program checks the server once a day: initialize and tools/list, no model. Tokens are the definitions' length at about four characters a token. The grade averages six checks of every tool's name, description, schema and annotations; it says how well the tools are described, not whether they work. The score weighs what was measured and nothing else: answering (30%), doing the product's job (25%), definitions (20%), context (10%) and use (15%). A part that was not measured is left out, and a hidden instruction caps the score at 40. The state of vendors' MCP servers: method and numbers →

• list_genes

  List the genes in the DeepDNA knowledge base, with a one-line summary and category for each.

• lookup_gene

  Everything curated about one gene: function, key variants with rsIDs, metabolizer or function phenotypes, drug interactions, what a consumer genotyping array can and cannot tell you, and sources.

• lookup_variant

  One variant by dbSNP rsID: gene, star-allele or common name, alleles, functional effect, population frequency and sources. Send the rsID only, never the user's genotype. To compare a raw DNA file, do it in the agent with the record's…

• lookup_drug_gene

  Pharmacogenomic guidance for a gene, optionally for one drug: guideline (CPIC or DPWG, "drug label", or null when the record rests on the primary literature), summary of the recommendation, phenotypes and sources. Omit drug to list every…

• check_medications

  Given a list of generic drug names, say which ones have a curated drug–gene record, with which genes and what each record rests on (a CPIC or DPWG guideline, a drug label, or the primary literature), and which are not covered. Needs no…

• request_beta_access

  Register the user's interest in DeepDNA's private beta (DNA file parsing, annotation, bloodwork; not deployed yet). Only call this after the user has explicitly agreed to share their email with DeepDNA for this purpose, and set…

• ai.deepdna/localnot asked yetverified in the MCP registry